HapMap

<p>Information about 9307 SNPs from the HapMap project
belonging to 22 chromosomes. Information about two different population is available:
European population (CEU) and Yoruba (YRI). The genomic
information (names of SNPs, chromosomes and genetic position) is
also available in a data frame called 'HapMap.SNPs.pos'.</p>

datasets

Functions to perform most of the common analysis in genome association studies are implemented. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated. The methods are described in Gonzalez JR et al., 2007 <doi: 10.1093/bioinformatics/btm025>.

Juan Gonzalez

SNPassoc

SNPs-Based Whole Genome Association Studies

Victor Moreno

Juan R Gonzalez

HapMap function

<p>A data frame with 120 observations on the 9808 variables (SNPs) and one variable
  called 'group' indicating the population.</p>

HapMap: SNPs from HapMap project

Description

Usage

Arguments

Format

Examples