Internal SNPassoc functions
association.fit(var, dep, adj, quantitative, type, level,
nIndiv, genotypingRate = 0, ...)
extractPval(x)
extractPval.i(i,x,pos,models)
SNPHWE(x)
GenotypeRate(x)
haplo.inter.fit(geno, var2, dep, adj = NULL, fam,
haplo.freq.min, ...)
crea.lab(x,pos.ini,cex,dist)
orderChromosome(x)
togeno(f,sep=sep,lab=lab)
expandsetupSNP(o)
pvalTest(dataX,Y,quantitative,type,genotypingRate)
modelTest(X,Y,quantitative,type,genotypingRate)
assoc(y,x,test="lrt",quantitative)
trim(s)
interleave(..., append.source=TRUE, sep=": ", drop=FALSE)
# S3 method for default
codominant(o)
# S3 method for default
dominant(o)
# S3 method for default
recessive(o)
# S3 method for default
overdominant(o)
# S3 method for default
additive(o)No return value, internal calls
These are not to be called by the user