SNPs.info.pos

SNPs data.frame contains selected SNPs and other clinical covariates for cases and controls 
 in a case-control study 
SNPs.info.pos data.frame contains the names of the SNPs included in the data set 'SNPs' including
 their chromosome and their genomic position

datasets

Functions to perform most of the common analysis in genome
association studies are implemented. These analyses include descriptive
statistics and exploratory analysis of missing values, calculation of
Hardy-Weinberg equilibrium, analysis of association based on generalized
linear models (either for quantitative or binary traits), and analysis
of multiple SNPs (haplotype and epistasis analysis). Permutation test
and related tests (sum statistic and truncated product) are also
implemented. Max-statistic and genetic risk-allele score exact
distributions are also possible to be estimated. The methods are
described in Gonzalez JR et al., 2007 <doi: 10.1093/bioinformatics/btm025>.

Dolors Pelegri-Siso

SNPassoc

SNPs-Based Whole Genome Association Studies

Victor Moreno

Juan R Gonzalez

Dolors Pelegri

SNPs.info.pos function

'SNPs.info.pos' data.frame contains the following columns:
 A data frame with 35 observations on the following 3 variables.<dl>
 <dt><code>snp</code></dt>
<dd>name of SNP</dd> <dt><code>chr</code></dt>
<dd>name of chromosome</dd> <dt><code>pos</code></dt>
<dd>genomic position</dd> 
</dl>

Format

SNPs in a case-control study — SNPs.info.pos

'SNPs.info.pos' data.frame contains the following columns:
 A data frame with 35 observations on the following 3 variables.<dl>
 <dt><code>snp</code></dt>
<dd>name of SNP</dd>

 <dt><code>chr</code></dt>
<dd>name of chromosome</dd>

 <dt><code>pos</code></dt>
<dd>genomic position</dd>

 
</dl>

SNPs.info.pos: SNPs in a case-control study

Description

Usage

Arguments

Format