compute_Q1

<p>Compute the haplotype transition matrices based on the fastPHASE HMM</p>

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Generate knockoffs for genetic data and hidden Markov models.
For more information, see the website below and the accompanying papers:
"Gene hunting with hidden Markov model knockoffs", Sesia et al., Biometrika, 2019, (<doi:10.1093/biomet/asy033>).
"Multi-resolution localization of causal variants across the genome", Sesia et al., bioRxiv, 2019, (<doi:10.1101/631390>).

Matteo Sesia

compute_Q1: Compute the haplotype transition matrices based on the fastPHASE HMM

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