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SOUP (version 1.1)

Stochastic Ordering Using Permutations (and Pairwise Comparisons)

Description

Construct a ranking of a set of treatments/groups by gathering together information coming from several response variables. It can be used with both balanced and unbalanced experiments (with almost all test statistics) as well as in presence of either continuous covariates or a stratifying (categorical) variable.

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Version

Install

install.packages('SOUP')

Monthly Downloads

11

Version

1.1

License

GPL (>= 2)

Maintainer

Federico Mattiello

Last Published

April 4th, 2015

Functions in SOUP (1.1)

rankingRule

Performs the ranking
PermSpace

Class PermSpace
initialize

Methods for function initialize in package SOUP: constructor
BHS

Multiplicity adjustment by Bonferroni-Holm-Shaffer's rule
t2p

From Test Statistics To p-Values
.makePermSpaceID

Constructs Row Indices Permutation Space
SoupObject

Class SoupObject
.DesM

Design Matrix For Pairwise Differences
PValueMat

Class PValueMat
SOUP

SOUP Main Function
.dummyze

From Factor To Dummy Variables
print

signature(x = "PermSpace")
It prints the whole object on screen (mostly useful for external saving)
as.list

Methods for function as.list in package SOUP
show

signature(object = "PermSpace")
Shows only the main information (on screen) for the object
.makePValueMat

Construct Univariate p-Values Matrix
FWEminP

FWE Adjustment Using Permutation
NPC

NonParametric Combination of Test Statistic
iterNPC

Iterated NonParametric Combination
RankResults

Ranking Results
.orthoX

Residualises the response variables w.r.t. the matrix of covariates like in the linear models, therefore projecting on the space $I - H$ where $H$ is the hat matrix of $X$