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SPA3G (version 1.0)
SPA3G: R package for the method of Li and Cui (2012)
Description
The package implements the model-based kernel machine method for detecting gene-centric gene-gene interactions of Li and Cui (2012).
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Version
Version
1.0
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Install
install.packages('SPA3G')
Monthly Downloads
10
Version
1.0
License
GPL (>= 3)
Maintainer
ORPHANED
Last Published
March 23rd, 2012
Functions in SPA3G (1.0)
Search functions
Score.Test.Overall
Implement the overall genetic effect test for H0:
SPA
run SPA
KERNEL
Calculate Kernel Matrix
WEIGHT_maf
Returns minor allele frequency based weights
TRACE
Returns trace of a square matrix
PROJECT
Column-wise Mean Centered
Score.Test.Interact
Implement the gene-centric gene-gene interaction effect test for H0:
SPA3G-package
SPA3G
TT
Returns the trace of the product of two matrices
SPA.example
An example data set