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SPIAssay (version 1.0.0)

A genetic-based assay for the identification of cell lines

Description

The SNP Panel Identification Assay (SPIA) is a package that enables an accurate determination of cell line identity from the genotype of single nucleotide polymorphisms (SNPs). The SPIA test allows to discern when two cell lines are close enough to be called similar and when they are not.

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Version

Install

install.packages('SPIAssay')

Monthly Downloads

15

Version

1.0.0

License

GPL (>= 2)

Maintainer

Davide Prandi

Last Published

August 4th, 2011

Functions in SPIAssay (1.0.0)

SPIAPlot

Function to visualize the result of the SPIA test
ComputingSPIADistance

Function ComputingSPIADistance computes SPIA distance bewteen two SNPs vectors
toSPIAData

Function to code SNPs data into SPIA format
SPIATest

Function to compute SPIA test
getSPIALimits

Function getSPIALimits computes the limits for the SPIA test
SPIAssay

A genetic-based assay for the identification of cell lines