SPIAssay (version 1.1.0)

ComputingSPIADistance: Function ComputingSPIADistance computes SPIA distance bewteen two SNPs vectors

Description

Function ComputingSPIADistance computes SPIA distance between two cell lines.

Usage

ComputingSPIADistance(vector1, vector2, defaultDigists = 5, verbose = FALSE)

Arguments

vector1

a vector representing the SNPs of the first cell line

vector2

a vector representing the SNPs of the second cell line

defaultDigists

significative digits (default 5)

verbose

verbose mode

Value

A row with informations of about the distance 1. SPIA distance 2. number of valid calls 3. number of total calls 4. number of calls where one of the two SPNs are not available 5. number of calls where both SNPs are not available 6. number of calls where SNP change from AA,BB to AB or from AB to AA,BB 7. number of calls where SNP change from AA to BB or from BB to AA