SQUADD (version 1.22.0)

plotCC: Generate the Correlation Circle.

Description

This method generates the correlation circle. Correlation circle is used to assess the coherence of a model. Indeed, Each vector represents our conditions and the angle between each vector give the correlation between the variables. if the angle is higher than 90 degrees there is no correlation.

Usage

plotCC(object)

Arguments

object

Object of the Class SquadSimResServiceImpl.

Details

The percentage of variability explained by the two first principal components are displayed in parenthesis in the axis label.

See Also

More specific information in plotCC-methods. For more informations about the input object see SquadSimResServiceImpl-class.

Examples

fpath <- system.file("extdata", package="SQUADD")
fileModel <- file.path(fpath,"data_IAA")
nm <- c("ARF(a)", "ARF(i)", "AR_Genes", "Aux/IAA", "BES1/BZR1",
 "BIN2", "BR", "BRI1-BAK1","BRR_Genes","BRX","BR_Biosynthesis","BZR1",
  "DO", "IAA", "IAA_Biosynthesis", "NGA1", "PIN", "SCFTir1",
  "StimAux", "StimBR")
t <- 50

## call constructor
obj <- simResService(
		folder=fileModel,
		time=t,
		ncolor=5,
		legend=nm,
		indexDeno=1,
		method="lowess",
		conditionList=c("Normal", "brxlof", "BRrescue","brxarfilof", 
		             "brxarfiBRrescue", "brxgof")
)
## call method
plotCC(obj)