SRAdb (version 1.30.0)

IGVsort: Sort an alignment track by the specified option.

Description

Using the remote command port of IGV, Sorts an alignment track by the specified option. Recognized values for the option parameter are: base, position, strand, quality, sample, and readGroup.

Usage

IGVsort(sock, option)

Arguments

sock

A socket connection to IGV.

option

Recognized values for the option parameter are: base, position, strand, quality, sample, and readGroup.

References

http://www.broadinstitute.org/igv/PortCommands

See Also

startIGV, IGVload

Examples

  ## Not run: 
#   sock <- IGVsocket()
#   IGVsort(sock, 'position')
#   IGVsort(sock, 'base')
#   IGVsort(sock, 'sample')
#   ## End(Not run)