Shiny2SRT

Create a SRTsim object from reference-free shinyoutput

An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.

Jiaqiang Zhu

SRTsim

Simulator for Spatially Resolved Transcriptomics

Lulu Shang

Xiang Zhou

Shiny2SRT function

<dl><dt>shinyOutput</dt>
<dd>A list of Shiny Output. Including a simCount, simInfo,simcountParam,simLocParam</dd></dl>

Arguments

Create a SRTsim object from reference-free shinyoutput — Shiny2SRT

<dl>

<dt>shinyOutput</dt>
<dd>A list of Shiny Output. Including a simCount, simInfo,simcountParam,simLocParam</dd>

</dl>

Shiny2SRT: Create a SRTsim object from reference-free shinyoutput

Description

Usage

Value

Arguments

Examples