exampleLIBD

A data list containing the a gene expression matrix and a location dataframe

datasets

An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.

Jiaqiang Zhu

SRTsim

Simulator for Spatially Resolved Transcriptomics

Lulu Shang

Xiang Zhou

exampleLIBD function

A data list<dl>
<dt>example_count</dt>
<dd>A sparse matrix with 80 rows and 3611 columns.</dd><dt>example_loc</dt>
<dd>A data frame with 3611 rows and 6 columns.</dd>
</dl>

Format

Data used for creating vignettes — exampleLIBD

A data list<dl>
<dt>example_count</dt>
<dd>A sparse matrix with 80 rows and 3611 columns.</dd>

<dt>example_loc</dt>
<dd>A data frame with 3611 rows and 6 columns.</dd>


</dl>

exampleLIBD: Data used for creating vignettes

Description

Usage

Arguments

Format

Examples