get_stats_gene

Summarize gene-wise summary metrics

An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.

Jiaqiang Zhu

SRTsim

Simulator for Spatially Resolved Transcriptomics

Lulu Shang

Xiang Zhou

get_stats_gene function

<dl><dt>mat</dt>
<dd>A count matrix</dd>
<dt>group</dt>
<dd>A group label</dd>
<dt>log_trans</dt>
<dd>A logical constant indicating whether to log transform the gene mean and variance</dd></dl>

Arguments

Summarize gene-wise summary metrics — get_stats_gene

<dl>

<dt>mat</dt>
<dd>A count matrix</dd>


<dt>group</dt>
<dd>A group label</dd>


<dt>log_trans</dt>
<dd>A logical constant indicating whether to log transform the gene mean and variance</dd>

</dl>

get_stats_gene: Summarize gene-wise summary metrics

Description

Usage

Value

Arguments