toyData

A data list containing the a gene expression matrix and a location dataframe

datasets

An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.

Jiaqiang Zhu

SRTsim

Simulator for Spatially Resolved Transcriptomics

Lulu Shang

Xiang Zhou

toyData function

A data list<dl>
<dt>toyCount</dt>
<dd>A sparse matrix with 100 rows and 251 columns.</dd><dt>toyInfo</dt>
<dd>A data frame with 251 rows and 3 columns.</dd>
</dl>

Format

A toyExample to showcase reference-based simulations — toyData

A data list<dl>
<dt>toyCount</dt>
<dd>A sparse matrix with 100 rows and 251 columns.</dd>

<dt>toyInfo</dt>
<dd>A data frame with 251 rows and 3 columns.</dd>


</dl>

toyData: A toyExample to showcase reference-based simulations

Description

Usage

Arguments

Format

Examples