Performs receptor abundance estimation for single cell RNA-sequencing data using a supervised feature selection mechanism and a thresholded gene set scoring procedure. Seurat's normalization method is described in: Hao et al., (2021) tools:::Rd_expr_doi("10.1016/j.cell.2021.04.048"), Stuart et al., (2019) tools:::Rd_expr_doi("10.1016/j.cell.2019.05.031"), Butler et al., (2018) tools:::Rd_expr_doi("10.1038/nbt.4096") and Satija et al., (2015) tools:::Rd_expr_doi("10.1038/nbt.3192"). Method for reduced rank reconstruction and rank-k selection is detailed in: Javaid et al., (2022) tools:::Rd_expr_doi("10.1101/2022.10.08.511197"). Gene set scoring procedure is described in: Frost et al., (2020) tools:::Rd_expr_doi("10.1093/nar/gkaa582"). Clustering method is outlined in: Song et al., (2020) tools:::Rd_expr_doi("10.1093/bioinformatics/btaa613") and Wang et al., (2011) tools:::Rd_expr_doi("10.32614/RJ-2011-015").
Maintainer: Azka Javaid azka.javaid.gr@dartmouth.edu
Authors:
H. Robert Frost hildreth.r.frost@dartmouth.edu