\S4method{benchmark_ppi_pathway_view}{STRINGdb}


data frame that comes out from the benchmark_ppi function.


benchmark_ppi_data_frame


threshold that specify where to stop taking considering the interactions in the sorted input data frame (the list is scanned until the precision goes below this value).


precision_threshold


the pathway category to use (KEGG by default)


pathwayType


Takes in input the results of the benchmark_ppi function, and constructs a new table that provides a view at the pathway level 
    (i.e. it list all the pathways to which the interactions belong)


benchmark_ppi_pathway_view

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Alexander Roth

STRINGdb

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

benchmark_ppi_pathway_view function

data frame that comes out from the benchmark_ppi function.

threshold that specify where to stop taking considering the interactions in the sorted input data frame (the list is scanned until the precision goes below this value).

the pathway category to use (KEGG by default)

Takes in input the results of the benchmark_ppi function, and constructs a new table that provides a view at the pathway level 
    (i.e. it list all the pathways to which the interactions belong)

benchmark_ppi_pathway_view: benchmark_ppi_pathway_view

Description

Usage

Arguments

Value