\S4method{get_clusters}{STRINGdb}

string_ids


algorithm to use for the clustering. You can choose between "fastgreedy", "walktrap", "spinglass" and "edge.betweenness").


algorithm


Returns a list of clusters of interacting proteins.
See the iGraph (http://igraph.sourceforge.net/) documentation for additional information on the algorithms.


get_clusters

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Alexander Roth

STRINGdb

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

get_clusters function

algorithm to use for the clustering. You can choose between "fastgreedy", "walktrap", "spinglass" and "edge.betweenness").

Returns a list of clusters of interacting proteins.
See the iGraph (http://igraph.sourceforge.net/) documentation for additional information on the algorithms.

get_clusters: get_clusters

Description

Usage

Arguments

Value