\S4method{get_enrichment}{STRINGdb}

string_ids


category for which to compute the enrichment (i.e. "Process", "Component", "Function", "KEGG", "Pfam", "InterPro"). The default category is "Process".


methodMT


specify whether you also want to use electronic inference annotations



with Tissue and Disease categories is possible to filter the annotations having an annotation score higher than this threshold (from 0 to 5)


minScore


Returns the enrichment in pathways of the vector of STRING proteins that is given in input.


get_enrichment

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Alexander Roth

STRINGdb

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

get_enrichment function

category for which to compute the enrichment (i.e. "Process", "Component", "Function", "KEGG", "Pfam", "InterPro"). The default category is "Process".

method to be used for the multiple testing correction. (i.e.  "fdr", "bonferroni"). The default is "fdr".

specify whether you also want to use electronic inference annotations

with Tissue and Disease categories is possible to filter the annotations having an annotation score higher than this threshold (from 0 to 5)

Returns the enrichment in pathways of the vector of STRING proteins that is given in input.

get_enrichment: get_enrichment

Description

Usage

Arguments

Value