flankingRegions

The flanking regions searched for to identify the markers and STR regions of all autosomal/X/Y STR's in the Illumina ForenSeq prep kit.

data

Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Note: that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.

Sc3<b8>ren Vilsen

STRMPS

Analysis of Short Tandem Repeat (STR) Massively Parallel
Sequencing (MPS) Data

flankingRegions function

A <a href="https://tibble.tidyverse.org/reference/tibble.html">tibble</a> containing the flanks (forward and reverse), motif, motif length, adjustment need to make it compatible with CE, and the shifts needed for further trimming, for each marker

Format

Søren B. Vilsen <a href="/link/svilsen%40math.aau.dk?package=STRMPS&version=0.6.8" data-mini-rdoc="STRMPS::svilsen@math.aau.dk">svilsen@math.aau.dk</a>

Author

Flanking regions — flankingRegions

A <a href='https://tibble.tidyverse.org/reference/tibble.html'>tibble</a> containing the flanks (forward and reverse), motif, motif length, adjustment need to make it compatible with CE, and the shifts needed for further trimming, for each marker

Søren B. Vilsen <a href='mailto:svilsen@math.aau.dk'>svilsen@math.aau.dk</a>

flankingRegions: Flanking regions

Description

Usage

Arguments

Format

Author