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STRMPS (version 0.6.8)

stringCoverage.control: String coverage coontrol object

Description

String coverage coontrol object

Usage

stringCoverage.control(
  numberOfThreads = 4L,
  simpleReturn = TRUE,
  uniquelyAssigned = TRUE,
  additionalFlags = FALSE,
  numberOfMutations = 1,
  includeAverageBaseQuality = FALSE,
  meanFunction = mean,
  trace = FALSE
)

Value

List of parameters used for the 'stringCoverage' function.

Arguments

numberOfThreads

The number of cores used for parallelisation.

simpleReturn

TRUE/FALSE: Should the returned object be simplified?

uniquelyAssigned

TRUE/FALSE: Should regions which are not uniquely assigned be removed?

additionalFlags

TRUE/FALSE: Create additional flags for assessing sequence reliability?

numberOfMutations

the maximum number of mutations (base-calling errors) allowed during flanking region identification.

includeAverageBaseQuality

Should the average base quality of the region be included?

meanFunction

The function used to average the base qualities.

trace

TRUE/FALSE: Show trace?

Details

Control function for the 'stringCoverage' function. Sets default values for the parameters.