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SUMMER

Spatio-temporal Under-five Mortality Models of Estimation in R

Installation

Currently, the package is only available through Github. CRAN submission is waiting on the completion and publication of a manuscript. For now, use the code below to install SUMMER.

# install.packages("devtools")
devtools::install_github("martinbryan/SUMMER")

Usage

To see example usage of all main functions, build the package vignette. Note that the vignette will take a few minutes to compile.

# install.packages("devtools")
devtools::install_github("martinbryan/SUMMER", build_vignettes = TRUE)
# Use this to view the vignette in the SUMMER HTML help
help(package = "SUMMER", help_type = "html")
# Use this to view the vignette as an isolated HTML file
utils::browseVignettes(package = "SUMMER")

Bug Reports / Change Requests

If you encounter a bug or would like make a change request, please file it as an issue here.

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Version

Install

install.packages('SUMMER')

Monthly Downloads

1,363

Version

0.1.0

License

GPL (>= 2)

Issues

Pull Requests

Stars

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Maintainer

Bryan D Martin

Last Published

November 30th, 2017

Functions in SUMMER (0.1.0)

countrySummary

Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey.
logit

Logit transformation
countrySummary_mult

Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys.
ChangeRegion

Function to map region names to a common set.
getBirths

Function to get Births file from DHS .dta files.
SUMMER-package

SUMMER package documentation.
expit

Expit transformation
mapPlot

Makes map plot.
fitINLA

Fit INLA models to direct estimators.
projINLA

Function to obtain projected estimates from INLA for each time and region.
Uganda

Fake Uganda dataset for vignette.
projINLA_multi

Function to obtain smoothed estimates from fitted INLA object.
UgandaMap

Uganda map dataset for vignette.
read_shape

Function to read shape files.
simhyper

Function to simulate hyperpriors from an adjacency matrix.
spagPlot

Makes spaghetti plot.