Learn R Programming

⚠️There's a newer version (2.0.0) of this package.Take me there.

SUMMER

Spatio-temporal Under-five Mortality Models of Estimation in R

Installation - CRAN

The package is now available on CRAN. The easiest way to downlaod is to install directly using the code below.

install.packages("SUMMER")

Installation - Development Version

To download the development version of the SUMMER package, use the code below.

# install.packages("devtools")
devtools::install_github("bryandmartin/SUMMER")

Development Version Updates

The CRAN version of the package is currently up to date.

Usage

To see example usage of all main functions, build the package vignette. Note that the vignette will take a few minutes to compile.

# install.packages("devtools")
devtools::install_github("bryandmartin/SUMMER", build_vignettes = TRUE)
# Use this to view the vignette in the SUMMER HTML help
help(package = "SUMMER", help_type = "html")
# Use this to view the vignette as an isolated HTML file
utils::browseVignettes(package = "SUMMER")

Bug Reports / Change Requests

If you encounter a bug or would like make a change request, please file it as an issue here.

Copy Link

Version

Install

install.packages('SUMMER')

Monthly Downloads

1,316

Version

0.2.1

License

GPL (>= 2)

Issues

Pull Requests

Stars

Forks

Maintainer

Bryan D Martin

Last Published

July 16th, 2018

Functions in SUMMER (0.2.1)

rst

Simulate spatial and temporal random effects
fitSpace

Fit INLA models to perform simple space smoothing.
aggregateSurvey

Aggregate estimators from different surveys.
countrySummary_mult

Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys.
DemoMap

Map dataset for vignette.
countrySummary

Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey.
DemoData2

Fake dataset for vignette.
expit

Expit transformation
logit

Logit transformation
DemoData

Fake dataset for vignette.
getBirths

Function to get Births file from DHS .dta files.
mapPlot

Makes map plot.
read_shape

Function to read shape files.
SUMMER-package

SUMMER package documentation.
ChangeRegion

Function to map region names to a common set.
simhyper

Function to simulate hyperpriors from an adjacency matrix.
DemoMap2

Map dataset for vignette.
fitINLA

Fit INLA models to direct estimators with a yearly model.
projINLA

Function to obtain projected estimates from INLA for each time and region.
plot.projINLA

Plot projection output.