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SUMMER

Spatio-temporal Under-five Mortality Models of Estimation in R

Installation - CRAN

The package is now available on CRAN. The easiest way to downlaod is to install directly using the code below.

install.packages("SUMMER")

Installation - Development Version

To download the development version of the SUMMER package, use the code below.

# install.packages("devtools")
devtools::install_github("bryandmartin/SUMMER")

Development Version Updates

The CRAN version of the package is currently up to date.

Usage

To see example usage of all main functions, build the package vignette. Note that the vignette will take a few minutes to compile.

# install.packages("devtools")
devtools::install_github("bryandmartin/SUMMER", build_vignettes = TRUE)
# Use this to view the vignette in the SUMMER HTML help
help(package = "SUMMER", help_type = "html")
# Use this to view the vignette as an isolated HTML file
utils::browseVignettes(package = "SUMMER")

Bug Reports / Change Requests

If you encounter a bug or would like make a change request, please file it as an issue here.

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Version

Install

install.packages('SUMMER')

Monthly Downloads

1,400

Version

0.2.3

License

GPL (>= 2)

Issues

Pull Requests

Stars

Forks

Maintainer

Bryan D Martin

Last Published

April 2nd, 2019

Functions in SUMMER (0.2.3)

mapPlot

Makes map plot.
projINLA

Function to obtain projected estimates from INLA for each time and region.
DemoData2

Fake dataset for vignette.
plot.projINLA

Plot projection output.
rst

Simulate spatial and temporal random effects
read_shape

Function to read shape files.
fitINLA

Fit INLA models to direct estimators with a yearly model.
fitSpace

Fit INLA models to perform simple space smoothing.
getBirths

Function to get Births file from DHS .dta files.
countrySummary_mult

Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys.
logit

Logit transformation
expit

Expit transformation
simhyper

Function to simulate hyperpriors from an adjacency matrix.
SUMMER-package

SUMMER package documentation.
ChangeRegion

Function to map region names to a common set.
aggregateSurvey

Aggregate estimators from different surveys.
countrySummary

Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey.
DemoMap

Map dataset for vignette.
DemoMap2

Map dataset for vignette.
DemoData

Fake dataset for vignette.
KingCounty

Map of King County
BRFSS

The BRFSS dataset