SWATH2stats (version 1.2.3)

reduce_OpenSWATH_output: Reduce columns of OpenSWATH data

Description

This function selects the columns from the standard OpenSWATH output to column needed for MSstats, aLFQ and mapDIA.

Usage

reduce_OpenSWATH_output(data, column.names=NULL)

Arguments

data

A data frame containing SWATH data.

column.names

A vector of column names that can be selected.

Value

• Returns a data frame with the selected columns.

Examples

data("OpenSWATH_data", package="SWATH2stats")
data("Study_design", package="SWATH2stats")
data <- sample_annotation(OpenSWATH_data, Study_design)
data.filtered <- reduce_OpenSWATH_output(data)