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SWMPr (version 2.0.0)

Retrieving, Organizing, and Analyzing Estuary Monitoring Data

Description

Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System. These tools address common challenges associated with continuous time series data for environmental decision making.

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Version

Install

install.packages('SWMPr')

Monthly Downloads

668

Version

2.0.0

License

CC0

Maintainer

Marcus W Beck

Last Published

April 1st, 2015

Functions in SWMPr (2.0.0)

swmpr

Create a swmpr object
qaqc

QAQC filtering for SWMP data
rem_reps

Remove replicates in nutrient data
single_param

Get CDMO records for a single parameter
decomp_cj

Simple trend decomposition of monthly swmpr data
hist.swmpr

Plot swmpr using a histogram
apaebmet

Example weather data for Apalachicola Bay East Bay station.
plot.swmpr

Plot swmpr data
import_local

Import local CDMO data
apacpnut

Example nutrient data for Apalachicola Bay Cat Point station.
comb

Combine swmpr data
apacpwq

Example water quality data for Apalachicola Bay Cat Point station.
calckl

Calculate oxygen mass transfer coefficient
ecometab

Ecosystem metabolism
site_codes_ind

Obtain metadata for a single reserve
all_params_dtrng

Get CDMO records within a date range
setstep

Format a swmpr time vctor
smoother

Smooth swmpr data
aggremetab

Aggregate metabolism data
apadbwq

Example water quality data for Apalachicola Bay Dry Bar station.
stat_locs

Locations of NERRS sites
time_vec

Format SWMP datetimestamp
site_codes

Obtain metadata for all stations
parser

Parse web results for swmpr
map_reserve

Map a reserve
metab_day

Identify metabolic days in a swmpr time series
aggreswmp

Aggregate swmpr data
qaqcchk

Summary of QAQC flags in SWMP data
import_remote

Import SWMP data from Amazon web services
param_names

Get parameters of a given type
decomp

Simple trend decomposition of swmpr data
all_params

Import current station records from the CDMO
na.approx.swmpr

Linearly interpolate gaps
subset.swmpr

Subset a swmpr object
plot_metab

Plot ecosystem metabolism for a swmpr object
plot_summary

Plot graphical summaries of SWMP data