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SWMPrExtension (version 0.3.12)

Additional Functions for Retrieving, Organizing, and Analyzing Estuary Monitoring Data

Description

Additional tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System . These tools address common challenges associated with continuous time series data for environmental decision making, and are intended for use in annual reporting activities.

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Version

Install

install.packages('SWMPrExtension')

Monthly Downloads

299

Version

0.3.12

License

CC0

Maintainer

Julie Padilla

Last Published

April 9th, 2018

Functions in SWMPrExtension (0.3.12)

res_custom_map

Local Reserve Map for Custom Stations
geographic_unique_stations

Return a vector of geographically unique NERR Stations
get_site_code

Return NERRS reserve site code based on data in the data file
assign_season

Assign seasons to SWMP sampling data
get_site_coordinates

Identify NERRS sampling locations from metadata
res_national_map

Reserve National Map
get_sites

Identify NERRS reserve stations from metadata
set_date_breaks

Set reasonable date breaks
summarise_handoff_files

Summarise Hand-off Files from Reserve Level Reports
sk_seasonal

Seasonal Kendall Analysis for Seasonal Data
res_sk_map

Local Reserve Map With Seasonal Kendall Results
threshold_criteria_plot

Water Quality Threshold Plot For Parameters With Criteria
sk_tidy

Tidy Seasonal Kendall Results
threshold_identification

Tabulate Threshold Exceedances
threshold_percentile_plot

Threshold Percentile Plot
std_param_check

Standard Parameter Check
get_reserve

Identify NERRS reserve from metadata
seasonal_boxplot

Seasonal boxplots
y_labeler

Generate y-axis Label Based on SWMP Parameter Abbreviation
load_shp_file

Load and format shapefile for reserve level map
national_sk_map

Reserve National Map with Seasonal Kendall Results
reserve_locs

NERRS Sampling Location Data Frame
res_custom_sk_map

Local Reserve Map With Seasonal Kendall Results for Custom Stations
threshold_summary

Summary Plots for Threshold Identification
sampling_stations

Detailed of NERRS site data
seasonal_dot

Seasonal Dot Plot
set_date_break_labs

Set reasonable date breaks labels
title_labeler

Generate Plot Title Based on NERR Site ID
us_aea

US County Map
res_local_map

Local Reserve Map
y_count_labeler

Generate y-axis Label Based on SWMP Parameter Abbreviation
create_sk_national_ft_reserves

Create a Flextable Object of Reserve Names
create_sk_national_ft_results

Create a Flextable Object of Seasonal Kendall Results
create_sk_flextable_list

Create a List of Flextable Objects
annual_range

Annual Range Timeseries
ft_col_names

Convert Parameter Abbreviations
get_shp_name

Identify shapefile for NERRS reserve
cbm_spatial

Spatial Data from Chesapeake Bay - Maryland
historical_daily_range

Historical Daily Range Timeseries
generate_results_table

Filter Reformatted Seasonal Kendall Results
elknmnut

Nutrient Data from Elkhorn Slough - North Marsh Station
elk_spatial

Spatial Data from Elkhorn Slough
elksmwq

Water Quality Data from Elkhorn Slough - South Marsh Station
historical_range

Historical Monthly/Seasonal Range Timeseries
raw_boxplot

Boxplots of raw data by user-defined season for a target year
generate_station_table

Filter Reformatted Seasonal Kendall Results
import_local_nut

Import local CDMO data
lm_p_labs

P-Value labels for Plotting
seasonal_barplot

Cumulative Bar Plot