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SWMPrExtension (version 1.1.6)

Functions for Analyzing and Plotting Estuary Monitoring Data

Description

Tools for performing routine analysis and plotting tasks with environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System . This package builds on the functionality of the SWMPr package , which is used to retrieve and organize the data. The combined set of tools address common challenges associated with continuous time series data for environmental decision making, and are intended for use in annual reporting activities. References: Beck, Marcus W. (2016) Rudis, Bob (2014) . United States Environmental Protection Agency (2015) . United States Environmental Protection Agency (2012) .

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Version

Install

install.packages('SWMPrExtension')

Monthly Downloads

299

Version

1.1.6

License

CC0

Maintainer

Dave Eslinger

Last Published

August 30th, 2020

Functions in SWMPrExtension (1.1.6)

elknmnut

Nutrient Data from Elkhorn Slough - North Marsh Station
create_sk_flextable_list

Create a List of Flextable Objects
cbm_spatial

Spatial Data from Chesapeake Bay - Maryland
elk_spatial

Spatial Data from Elkhorn Slough
create_sk_national_ft_results

Create a Flextable Object of Seasonal Kendall Results
create_sk_national_ft_reserves

Create a Flextable Object of Reserve Names
get_site_coordinates

Identify NERRS sampling locations from metadata
get_sites

Identify NERRS reserve stations from metadata
generate_results_table

Filter Reformatted Seasonal Kendall Results
generate_station_table

Filter Reformatted Seasonal Kendall Results
assign_season

Assign seasons to SWMP sampling data
annual_range

Annual Range Timeseries
historical_daily_range

Historical Daily Range Timeseries
res_national_map

Reserve National Map
res_local_map

Local Reserve Map
raw_boxplot

Boxplots of raw data by user-defined season for a target year
elksmwq

Water Quality Data from Elkhorn Slough - South Marsh Station
ft_col_names

Convert Parameter Abbreviations
national_sk_map

Reserve National Map with Seasonal Kendall Results
load_shp_file

Load and format shapefile for reserve level map
historical_range

Historical Monthly/Seasonal Range Timeseries
get_reserve

Identify NERRS reserve from metadata
res_custom_map

Local Reserve Map for Custom Stations
geographic_unique_stations

Return a vector of geographically unique NERR Stations
y_count_labeler

Generate y-axis Label Based on SWMP Parameter Abbreviation
seasonal_dot

Seasonal Dot Plot
seasonal_boxplot

Seasonal boxplots
remove_inf_and_nan

Replace Inf/-Inf/NaN values
y_labeler

Generate y-axis Label Based on SWMP Parameter Abbreviation
set_date_break_labs

Set reasonable date breaks labels
res_custom_sk_map

Local Reserve Map With Seasonal Kendall Results for Custom Stations
set_date_breaks

Set reasonable date breaks
sk_seasonal

Seasonal Kendall Analysis for Seasonal Data
sk_tidy

Tidy Seasonal Kendall Results
title_labeler

Generate Plot Title Based on NERR Site ID
us_laea

US County Map
get_site_code

Return NERRS reserve site code based on data in the data file
import_local_nut

Import local CDMO data
get_shp_name

Identify shapefile for NERRS reserve
seasonal_barplot

Cumulative Bar Plot
sampling_stations

Detailed of NERRS site data
lm_p_labs

P-Value labels for Plotting
summarise_handoff_files

Summarise Hand-off Files from Reserve Level Reports
std_param_check

Standard Parameter Check
res_sk_map

Local Reserve Map With Seasonal Kendall Results
reserve_locs

NERRS Sampling Location Data Frame
threshold_summary

Summary Plots for Threshold Identification
threshold_percentile_plot

Threshold Percentile Plot
threshold_criteria_plot

Water Quality Threshold Plot For Parameters With Criteria
threshold_identification

Tabulate Threshold Exceedances