SafeQuant (version 2.2.1)

getModifProteinCoordinates: Get modification coordinates on protein

Description

Get modification coordinates on protein

Usage

getModifProteinCoordinates(modifAnnot, peptideSeq, proteinSeq, format = 1)

Arguments

modifAnnot

modifcation as annotated by progenesis. E.g. '[15] Phospho (ST)|[30] Phospho (ST)'

peptideSeq

peptide sequence

proteinSeq

protein sequence

format

c(1,2) 1. progenesis 2. scaffold

Value

• vector of protein coordinates (mmodification residue number)

Details

NA

References

NA

Examples

print("No examples")