SafeQuant (version 2.3.1)

getAllEBayes: Perform statistical test (mderated t-test), comparing all case to control

Description

Perform statistical test (mderated t-test), comparing all case to control

Usage

getAllEBayes(eset = eset, adjust = F, log = T, method = "pairwise", adjustFilter = matrix(F, nrow = nrow(eset), ncol = length(levels(pData(eset)$condition)) - 1))

Arguments

eset

ExpressionSet

adjust

TRUE/FALSE adjust for multiple testing using Benjamini & Hochberg (1995) method

log

T/F log-transform expression values

method

c("all","pairwise")

adjustFilter

matrix T/F do not adjust for multiple testing

Value

ExpressionSet object

Details

No details

References

Empirical Bayes method, Smyth (2004), http://www.ncbi.nlm.nih.gov/pubmed/16646809

See Also

eBayes

Examples

print("No examples")