SafeQuant (version 2.3)

plotNbValidDeFeaturesPerFDR: Plot Total Number of diffrentially Abundant Features (applying ratio cutoff) vs. qValue/pValue for all conditions

Description

Plot Total Number of diffrentially Abundant Features (applying ratio cutoff) vs. qValue/pValue for all conditions

Usage

plotNbValidDeFeaturesPerFDR(sqa, upRegulated = T, log2RatioCufOff = log2(1), pvalRange = c(0, 0.3), pvalCutOff = 1, isLegend = T, isAdjusted = T, ylab = "Nb. Features", ...)

Arguments

sqa

SafeQuantAnalysis Object

upRegulated

TRUE/FALSE select for upregulated features

log2RatioCufOff

log2 ratio cut-off

pvalRange

pValue/qValue range

pvalCutOff

pValue/qValue cut-off

isLegend

TRUE/FALSE display legend

isAdjusted

TRUE/FALSE qValues/pValue on x-axis

ylab

default Nb. Features

...

see plot

Details

No details

References

NA

Examples

print("No examples")