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SanzCircos (version 0.1.0)

Functions for Creating 'Circos' Files

Description

A series of functions designed to aid in the creation of input files for the 'Circos' visualization platform . Included are two main function types - make_circos_x() and write_circos_x(). The "make" functions are designed to process an input data set, and return a data frame that can be manipulated and filtered to eliminate the need to write Perl scripts within the 'Circos' software platform for data filtering. The "write" functions take processed data frames from the "make" functions, and write .txt files compatible with the 'Circos' platform. In addition to these function types, there are other accessory functions that aid in the manipulation of the make_circos_x() returned data frames to enhance final visual appeal (such as color_circos_links()).

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Version

Install

install.packages('SanzCircos')

Monthly Downloads

1

Version

0.1.0

License

GPL-3

Maintainer

Matthew Woodruff

Last Published

May 4th, 2018

Functions in SanzCircos (0.1.0)

write_circos_links

write_circos_links
color_circos_links

color_circos_links
generate_searchable_links

generate_searchable_links
write_circos_histogram

write_circos_histogram
make_circos_df_1

make_circos_df_1
write_circos_karyotype

write_circos_karyotype
make_circos_links

make_circos_links