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SaturnCoefficient (version 1.3)

Statistical Evaluation of UMAP Dimensionality Reductions

Description

A metric expressing the quality of a UMAP layout. This is a package that contains the Saturn_coefficient() function that reads an input matrix, its dimensionality reduction produced by UMAP, and evaluates the quality of this dimensionality reduction by producing a real value in the [0; 1] interval. We call this real value Saturn coefficient. A higher value means better dimensionality reduction; a lower value means worse dimensionality reduction. Reference: Davide Chicco et al. "The Saturn coefficient for evaluating the quality of UMAP dimensionality reduction results" (2025, in preparation).

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install.packages('SaturnCoefficient')

Monthly Downloads

199

Version

1.3

License

GPL-3

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Maintainer

Davide Chicco

Last Published

December 17th, 2024

Functions in SaturnCoefficient (1.3)

continuity_score

Function that calculates the continuity score of a UMAP dimensionality reduction
calculatesSaturnContinuityTrustworthiness

Function that calculates the Saturn coefficient, trustworthiness score, and the continuity score of a UMAP dimensionality reduction
trustworthiness_score

Function that calculates the trustworthiness score of a UMAP dimensionality reduction
Saturn_coefficient

Function that calculates the Saturn coefficient to quantify the quality of a UMAP dimensionality reduction