ScISI (version 1.44.0)

createGODataFrame: A function to create a Dataframe from the GO protein complexes

Description

This function takes a named list (the names are the GO ID's representing some protein complex and the list elements are character vectors consisting of the members of each particular complex) and an Bipartite Graph Incidence Matrix and creates a dataframe with three columns: complex name, GO ID, and complex description.

Usage

createGODataFrame(cMembers, goMat)

Arguments

cMembers

Named list with GO ID's as names and character vector consisting of proteins of the respective complex

goMat

Bipartite Graph Incidence Matrix

Value

Dataframe:

names

The names of the GO Complexes

ID

The GO IDs' of the complexes

description

The description give by GO

Details

This function takes the output parameters of createGOMatrix and getGOInfo and creates the bipartite graph incidence matrix.

References

www.geneontology.org

Examples

#go = getGOInfo(wantAllComplexes = FALSE)
#goM = createGOMatrix(go)
#createGODF(go, goM)