ScISI (version 1.44.0)

createMipsDataFrame: A function that creates a data frame from the MIPS Data

Description

This function takes two parameters: (1) a named vector that has a description of the MIPS protein complexes (this vector is one of the two outputs from getMipsInfo referenced by DESC); (2) the matrix representation of the bipartite graph. The output of the function is a dataframe with three columns: the names of the complexes in the matrix; the ID of the corresponding complex; the description of the corresponding complex.

Usage

createMipsDataFrame(desc, mips)

Arguments

desc

A named character vector (where the name is the MIPS ID for each protein complex obtained by getMipsInfo) whose entries describe the corrsponding protein complex.

mips

The matrix representation of the protein complex membership graph for the MIPS protein complexes

Value

The return value is a data frame with three coluumns: the names column records the names of the protein complexes as indexed in the incidence matrix; the ID column records the MIPS ID that corresponds to each protein complex; the Desc column describes each of the protein complexes.

References

mips.gsf.de

Examples