ScISI (version 1.44.0)

createMipsMatrix: A function to create the bipartite graph incidence matrix from MIPS protein complexes

Description

This function takes the output from the getMipsInfo function and creates the bipartite graph incidence matrix where the rows are indexed by proteins and colunms by protein complexes (given by the MIPS ID's).

Usage

createMipsMatrix(mipsL)

Arguments

mipsL

A list consisting of the two items: mipsL$Mips is a named list of character vectors. The names correspond to MIPS protein complexes and the character vector correspond to the proteins within that complex; and mipsL$DESC is a named character vector where the names are the protein complex MIPS ID and the values is the description of the complex.

Value

A bipartite graph incidence matrix of the MIPS protein complexes where rows are indexed by proteins names and colunms by the MIPS ID's pre-fixed with "MIPS-".

References

mips.gfs.de

Examples

#mips= getMipsInfo(wantSubComplexes = FALSE)
#mipsM = createMipsMatrix(mips)