edgeProp: A function to estimate the edge proportion of a y2h induced graph
on a protein complex
Description
This function first creates the Y2H symmetric adjacency matrix on a
protein complex (as we ignore directionality). Then it calculates an
estimate for the proportion of edges the complex might have with high
probability (if the sampling is unbaised and without error). In
addition to this statistic, it also generates an instance of graph,
specifically a graphNEL, on the adjcency matrix.
Usage
edgeProp(comp, compB2P, sampled)
Arguments
comp
A character vector of the constitutent members of the
protein complex of interest
compB2P
A named list; the names correspond to constituent
proteins used as baits and the entries are the found hits (prey)
sampled
A character vector of constituent members used as baits