ScISI (version 1.44.0)

runAlignment: A function to establish preliminaries for the compBijection function.

Description

This function creates the record keeping bijMat and calls the compBijection function.

Usage

runAlignment(TSNMat, estMat, c2kMat)

Arguments

TSNMat

The first bipartite graph matrix

estMat

The second bipartite graph matrix

c2kMat

The matrix of similarity index between TSNMat and estMat

Value

The matrix bijMat with an alignment calculated by the function compBijection

Examples

#go = getGOInfo()
#mips = getMipsInfo()
#goM = createGOMatrix(go)
#mipsM = createMipsMatrix(mips)
#cc = runCompareComplex(mipsM, goM, byWhich = "ROW")
#align = runAlignment(mipsM, goM, cc$simInd)