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ScoreEB (version 0.1.1)

Score Test Integrated with Empirical Bayes for Association Study

Description

Perform association test within linear mixed model framework using score test integrated with Empirical Bayes for genome-wide association study. Firstly, score test was conducted for each marker under linear mixed model framework, taking into account the genetic relatedness and population structure. And then all the potentially associated markers were selected with a less stringent criterion. Finally, all the selected markers were placed into a multi-locus model to identify the true quantitative trait nucleotide.

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Version

Install

install.packages('ScoreEB')

Monthly Downloads

264

Version

0.1.1

License

GPL-3

Maintainer

Wenlong Ren

Last Published

September 15th, 2021

Functions in ScoreEB (0.1.1)

ScoreEB

Score Test Integrated with Empirical Bayes for Association Study
PCG

Preconditioned Conjugate Gradient
likelihood

Carry out likelihood ratio test
multinormal

Multivariate normal distribution
pheno

Phenotype of example data
ebayes_EM

Empirical Bayes for multi-locus selection
geno

Genotype of example data