SeBR (version 1.1.0)

concen_hbb: Posterior sampling algorithm for the HBB concentration hyperparameters

Description

Compute Monte Carlo draws from the (marginal) posterior distribution of the concentration hyperparameters of the hierarchical Bayesian bootstrap (hbb). The HBB is a nonparametric model for group-specific distributions; each group has a concentration parameter, where larger values encourage more shrinkage toward a common distribution.

Usage

concen_hbb(
  groups,
  shape_alphas = NULL,
  rate_alphas = NULL,
  nsave = 1000,
  ngrid = 500
)

Value

nsave x K samples of the concentration hyperparameters corresponding to the K groups

Arguments

groups

the group assignments in the observed data

shape_alphas

(optional) shape parameter for the Gamma prior

rate_alphas

(optional) rate parameter for the Gamma prior

nsave

(optional) number of Monte Carlo simulations

ngrid

(optional) number of grid points

Details

The concentration hyperparameters are assigned independent Gamma(shape_alphas, rate_alphas) priors. This function uses a grid approximation to the marginal posterior with the goal of producing a simple algorithm. Because this is a *marginal* posterior sampler, it can be used with the hbb sampler (which conditions on alphas) to provide a joint Monte Carlo (not MCMC) sampling algorithm for the concentration hyperparameters, the group-specific CDFs, and the common CDF. Note that diffuse priors on alphas tend to put posterior mass on large values, which leads to more aggressive shrinkage toward the common distribution (complete pooling). For moderate shrinkage, we use the default values shape_alphas = 30*K and rate_alphas = 1, where K is the number of groups.

References

Oganisian et al. (<https://doi.org/10.1515/ijb-2022-0051>)

Examples

# Dimensions:
n = 500 # number of observations
K = 3 # number of groups

# Assign groups w/ unequal probabilities:
ugroups = paste('g', 1:K, sep='') # groups
groups = sample(ugroups,
                size = n,
                replace = TRUE,
                prob = 1:K) # unequally weighted (unnormalized)

# Summarize:
table(groups)/n

# Marginal posterior sampling for alpha:
post_alpha = concen_hbb(groups)

# Summarize: posterior distributions
for(c in 1:K) {
  hist(post_alpha[,c],
       main = paste("Concentration parameter: group", ugroups[c]),
       xlim = range(post_alpha))
  abline(v = mean(post_alpha[,c]), lwd=3) # posterior mean
}