SeqArray (version 1.10.1)

seqAlleleCount: Get Allele Counts

Description

Calculates the allele counts.

Usage

seqAlleleCount(gdsfile, parallel=getOption("seqarray.parallel", FALSE))

Arguments

gdsfile

a SeqVarGDSClass object

parallel

FALSE (serial processing), TRUE (parallel processing) or other value; parallel is passed to the argument cl in seqParallel, see seqParallel for more details.

Value

A list.

See Also

seqAlleleCount, seqNumAllele

Examples

# the GDS file
(gds.fn <- seqExampleFileName("gds"))

# display
f <- seqOpen(gds.fn)

head(seqAlleleCount(f))


# close the GDS file
seqClose(f)