SeqArray (version 1.10.1)

seqNumAllele: Number of alleles

Description

Returns the numbers of alleles for each site.

Usage

seqNumAllele(gdsfile, parallel=getOption("seqarray.parallel", FALSE))

Arguments

gdsfile

a SeqVarGDSClass object

parallel

FALSE (serial processing), TRUE (parallel processing) or other value; parallel is passed to the argument cl in seqParallel, see seqParallel for more details.

Value

The numbers of alleles for each site.

See Also

seqAlleleFreq, seqMissing, seqParallel

Examples

# the GDS file
(gds.fn <- seqExampleFileName("gds"))

# display
f <- seqOpen(gds.fn)

table(seqNumAllele(f))

# close the GDS file
seqClose(f)