DEscore

DSscore

DEscore.perm

DSscore.perm


<code>DEscore</code> and <code>DSscore</code> are pre-calculated DE and DS scores, respectively; 
<code>DEscore.perm</code> and <code>DSscore.perm</code> are pre-calculated DE and DS scores on the permutation data sets, respectively; 
They are used in examples of the <code>SeqGSEA</code> package. 
Note that these scores are of no meaning but to demonstrate the usage of functions. 


datasets

The package generally provides methods for gene set
enrichment analysis of high-throughput RNA-Seq data by
integrating differential expression and splicing. It uses
negative binomial distribution to model read count data, which
accounts for sequencing biases and biological variation. Based
on permutation tests, statistical significance can also be
achieved regarding each gene's differential expression and
splicing, respectively.

Xi Wang

SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
differential expression and splicing

DEscore function

<code>DEscore</code> and <code>DSscore</code> are pre-calculated DE and DS scores, respectively; 
<code>DEscore.perm</code> and <code>DSscore.perm</code> are pre-calculated DE and DS scores on the permutation data sets, respectively; 
They are used in examples of the <code>SeqGSEA</code> package. 
Note that these scores are of no meaning but to demonstrate the usage of functions.

DEscore: Pre-calculated DE/DS scores

Description

Usage

Arguments

References