GS_example


An exemplified SeqGeneSet object to demonstrate functions in the <code>SeqGSEA</code> package. 
This object was generated with collection #6 (C6) gene sets of the Molecular Signatures 
Database (MSigDB) v3.1. 


datasets

The package generally provides methods for gene set
enrichment analysis of high-throughput RNA-Seq data by
integrating differential expression and splicing. It uses
negative binomial distribution to model read count data, which
accounts for sequencing biases and biological variation. Based
on permutation tests, statistical significance can also be
achieved regarding each gene's differential expression and
splicing, respectively.

Xi Wang

SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
differential expression and splicing

GS_example function

An exemplified SeqGeneSet object to demonstrate functions in the <code>SeqGSEA</code> package. 
This object was generated with collection #6 (C6) gene sets of the Molecular Signatures 
Database (MSigDB) v3.1.

GS_example: SeqGeneSet object example

Description

Usage

Arguments

References