RCS_example


An exemplified ReadCountSet object to demonstrate functions in the <code>SeqGSEA</code> package. 
This object is comprised of 20 samples across 5,000 exons, a part of the prostate cancer 
RNA-Seq data set from Kannan et al (2011). 
Please note that the count data in this example object is incomplete. 


datasets

The package generally provides methods for gene set
enrichment analysis of high-throughput RNA-Seq data by
integrating differential expression and splicing. It uses
negative binomial distribution to model read count data, which
accounts for sequencing biases and biological variation. Based
on permutation tests, statistical significance can also be
achieved regarding each gene's differential expression and
splicing, respectively.

Xi Wang

SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
differential expression and splicing

RCS_example function

An exemplified ReadCountSet object to demonstrate functions in the <code>SeqGSEA</code> package. 
This object is comprised of 20 samples across 5,000 exons, a part of the prostate cancer 
RNA-Seq data set from Kannan et al (2011). 
Please note that the count data in this example object is incomplete.

RCS_example: ReadCountSet object example

Description

Usage

Arguments

References