exonTestability

exons with read counts less than this cutoff are to be marked as untestable. 

cutoff


Check exon testability, filtering out exons with very few (default: 5) read counts 


The package generally provides methods for gene set
enrichment analysis of high-throughput RNA-Seq data by
integrating differential expression and splicing. It uses
negative binomial distribution to model read count data, which
accounts for sequencing biases and biological variation. Based
on permutation tests, statistical significance can also be
achieved regarding each gene's differential expression and
splicing, respectively.

Xi Wang

SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
differential expression and splicing

exonTestability function

exons with read counts less than this cutoff are to be marked as untestable.

Check exon testability, filtering out exons with very few (default: 5) read counts

exonTestability: Check exon testability

Description

Usage

Arguments

Value

See Also

Examples