get.pair

Generates the reverse compliment of a nucleotide sequence

Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 <doi:10.1101/287839>.

Paul C. Boutros

SeqKat

Detection of Kataegis

get.pair function

Arguments

Author

Get Pair — get.pair

get.pair: Get Pair

Description

Usage

Arguments

Author

Details

Examples