SeqKat (version 0.0.8)

get.toptn: Get Top Trinucleotides

Description

Generate a tri-nucleotide summary for each sliding window

Usage

get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

Arguments

somatic.subset

Data frame of somatic variants subset for a specific chromosome

chr

Chromosome

start.bp

Starting position

end.bp

Ending position

ref.dir

Path to a directory containing the reference genome.

Examples

# NOT RUN {
get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)
# }
# NOT RUN {
# }