RDocumentation
Moon
Learn R
Search all packages and functions
SeqMADE (version 1.0)
Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
Description
A network module-based generalized linear model for differential expression analysis with the count-based sequence data from RNA-Seq.
Copy Link
Copy
Link to current version
Version
Version
1.0
Down Chevron
Install
install.packages('SeqMADE')
Monthly Downloads
117
Version
1.0
License
GPL (>= 2)
Maintainer
Mingli Lei
Last Published
June 27th, 2016
Functions in SeqMADE (1.0)
Search functions
nbGLMdir
Identify Differential Expression Modules Based on the GLM Model with Up or Down-regulated Change
exprs
Gene Expression Dataset
SeqMADE-package
Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
moduleMatrix
Modulematrix Construction
nbGLMdirperm
Identify Differential Expression Modules Based on the GLM Method by Shuffling the Phenotypic Variables
Factor
Construction of Variable Factors
nbGLM
Identify Differential Expression Modules Based on the Generalized Linear Model
networkModule
NetworkModule