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SeqMADE (version 1.0)
Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
Description
A network module-based generalized linear model for differential expression analysis with the count-based sequence data from RNA-Seq.
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Version
Version
1.0
Install
install.packages('SeqMADE')
Monthly Downloads
105
Version
1.0
License
GPL (>= 2)
Maintainer
Mingli Lei
Last Published
June 27th, 2016
Functions in SeqMADE (1.0)
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nbGLMdir
Identify Differential Expression Modules Based on the GLM Model with Up or Down-regulated Change
exprs
Gene Expression Dataset
SeqMADE-package
Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
moduleMatrix
Modulematrix Construction
nbGLMdirperm
Identify Differential Expression Modules Based on the GLM Method by Shuffling the Phenotypic Variables
Factor
Construction of Variable Factors
nbGLM
Identify Differential Expression Modules Based on the Generalized Linear Model
networkModule
NetworkModule