SeqVarTools (version 1.10.0)

SeqVarTools-package: Tools for Variant Analysis

Description

This package provides tools for data exploration and analysis of variants, extending the functionality of the package SeqArray.

Details

SeqArray provides an alternative to the Variant Call Format (VCF) for storage of variants called from sequencing data, enabling efficient storage, fast access to subsets of the data, and rapid computation.

SeqVarTools provides an interface to the SeqArray storage format with tools for many common tasks in variant analysis and integration with basic S4 classes in Bioconductor.