Seurat (version 1.4.0.16)

PoissonDETest: Poisson test for UMI-count based data

Description

Identifies differentially expressed genes between two groups of cells using a poisson generalized linear model

Usage

PoissonDETest(object, cells.1, cells.2, genes.use = NULL,
  latent.vars = NULL, print.bar = TRUE, min.cells = 3)

Arguments

object

Seurat object

cells.1

Group 1 cells

cells.2

Group 2 cells

genes.use

Optional vector of genes to use in test. Default is all genes

latent.vars

effects to remove from comparison

print.bar

Prints progress bar

min.cells

Minimum number of cells in each group that express each gene

Value

Returns a p-value ranked matrix of putative differentially expressed genes.